HisCube Kit placed on grass

HisCube Ni-INDIGO His-tag protein purification MINI and MIDI Kits

Cube Biotech is proud to announce the launch of our first protein purification Kits. Using our in-house developed INDIGO ligand we ensure you that you have the best purification conditions possible.
INDIGO's checklist
Recyclable packaging that fulfills all FSC® guidelines.
Cube Biotech experience
Years of experience combined in a single Kit
Idea's behind INDIGO Ni
Innovation, that breaks tradition with NTA and IDA based purification resins

What are the HisCube Kits?

Our HisCube Ni-INDIGO His-tag protein purification MIDI and MINI Kits were created for the purpose of protein purification of His-tagged proteins from any kind of cell lysate or in vitro expression systems. As experts for protein purification of all kinds our R&D Team asks themselves two questions.
  1. Which components of a purification Kit are essential for proper protein purification?
  2. How can the process of His-tag protein purification be simplified?
  3. What limits traditional Ni-NTA purification systems and how can these limitations be overcome?

The first answer is: Binding Buffer, Washing Buffer, Elution Buffer combined with matching columns. These columns may either be batch spin columns for a centrifuge (MINI Kit) and MIDI-sized columns that can be used in a centrifuge or work as drip columns too.
The second answer comes along with the first.
The third question proved to be a little bit more work. As the limits of the NTA/IDA ligands had to be overcome.
HisCube Kit protocol in action
 

Contents of the MINI and MIDI Kits

HisCube Ni-INDIGO His-tag Protein Purification Kits
MINI Kit MIDI Kit
His Cube MINI Kit His Cube MIDI Kit
Contents:
  • 2 x 50 ml Binding Buffer
  • 2 x 50 ml Wash Buffer
  • 1 x 50 ml Elution Buffer
  • 50 x Mini Batch Spin Tubes
  • 50 x Collection Tubes
  • 1 x 500 mM DTT (add 1,016 mL ddH2O)
  • 1 x 500 mM EDTA (add 0.866 mL ddH2O)
  • Corresponding Protocol
Contents:
  • 2 x 50 ml Binding Buffer
  • 2 x 50 ml Wash Buffer
  • 1 x 50 ml Elution Buffer
  • 5 x 5 ml Spin Columns
  • 1 x 500 mM DTT (add 1,016 mL ddH2O)
  • 1 x 500 mM EDTA (add 0.866 mL ddH2O)
  • Corresponding protocol



Features of the MINI and MIDI Kits

There are two main components in our HisCube Kits: The Ni-INDIGO resin and the MINI/MIDI columns. Depending on your preferences here you may need a table centrifuge to perform your desired His-tag protein purifications. For the MINI Kit, the centrifuge is essential. The Columns of the MIDI Kit can optionally also be used as drip columns in case no matching centrifuge is available.

The table on the left lists the features of the Ni-INDIGO resin while the tables below show the features of the columns used in the individual Kits.
Usage Specific binding and purification of 6x His-tagged proteins
Specifity Affinity to His-tagged proteins
Binding capacity 100 mg/mL
Chelator Stability Stable in buffer containing 20 mM DTT and 20 mM EDTA
pH tolerance 2-13
Bead size 100 μm
Bead Ligand INDIGO

Features - MINI batch spin columns

Feature PureCube 1-step batch Mini
Usage Specific binding and purification of proteins using affinity chromatography and centrifugation
Body material Polypropylene
Filter pore size 0.1-0.2 µm low binding PVDF
Max. volume 600 µL (mini)
Max. g force 12,000-14,000 x g (45-degree fixed angle rotor)
Min. g force 2,500 x g for 1 min

Features - MIDI Columns

Feature PureCube 1-step batch Mini
Usage Specific binding and purification of proteins using affinity chromatography and centrifugation
Body material Polypropylene
Filter pore size 0.1-0.2 µm low binding PVDF
Max. volume 20 mL (midi)
Max. g force 1,500-2,000 x g (swing-bucket rotor)
Min. g force 100-200 x g for 1-10 min

The INDIGO ligand

Over the years our laboratory team gathered lots of experience in regards to protein purification. During this time the limitations of traditional NTA- and IDA-based purification resins became clear. Foremost their sensitivity to EDTA and DTT. EDTA is often used in mammalian cell buffers to inhibit any proteases that would decrease the protein yield. But also strips the NTA and IDA ligands of their Nickel-ions, thus making the beads useless. DTT on the other hand can be used to dissolve protein aggregates in the cell lysate that might hinder access to the protein's His-tag. But again DTT makes NTA-based beads useless. To counter these problems our R&D Team developed our INDIGO ligand that increases EDTA and DTT tolerance of a His-tag purification procedure up to 20 mM each. One question that may arise from this is how this new INDIGO ligand performs for His-tag purifications. Have a look at figure 1 to see a comparison between Ni-NTA and Ni-INDIGO.
INDIGO Purification qualities
Fig. 1: Overview of INDIGO-Ni agarose resin's purification properties. The immensely superior purity compared to traditional Ni-NTA agarose is worth mentioning. Especially for low-expressing proteins. Left side: The performance of our PureCube 100 INDIGO resin. Right side: Performance of Ni-NTA agarose from competitor T.

For this demonstration, His-tagged GFP was added in known concentrations (see bottom of the blot) to an E.coli cell lysate. This was done to mimic low protein expression rates with different distinct protein concentrations. As it can be seen both Ni-NTA from competitor T and INDIGO-Ni agarose resin purify His-tagged GFP, even at very low concentrations. However, the INDIGO concentration is highly superior in purity.